Does NT Wrapper Work with any Win32 Applications

NT Wrapper should work with most native Windows 32 bit applications or scripts.
But there are applications that do not handle certain system messages correctly when the user logs off. Those applications simply shutdown when the user logs off and are turned back on again if option "Restart Application" is enabled.
Also some applications do not restore their tray icon when a user logs on. Those applications should be fixed by their developers to restore the tray icon each time the taskbar is (re)created.

It's an easy task for the developers of such programs to provide a command line switch e.g. "-service" and handle some window messages like the WM_QUERYENDSESSION and WM_ENDSESSION in GUI applications or signal CTRL_LOGOFF_EVENT in console based programs in a different manner when the program is running in service mode.